refactor(pipeline): restructure config, add PromptDirectory, consolidate SQLite layer (#217)

* Refactor ApplicationOptions to separate config concerns

* add prompt dir app option

* readability updates: remove magic numbers, update comments

* codebase formatting

* Update docs

* Extract argument parsing, timer out of

tooling/pipeline/src/services/sqlite/initialize.cc

@@ -11,6 +11,19 @@
 #include "services/sqlite_export_service.h"
 #include "services/sqlite_export_service_helpers.h"
 
+std::filesystem::path SqliteExportService::BuildDatabasePath() const {
+  std::filesystem::path base_filename("biergarten_seed_" + run_timestamp_utc_ +
+                                      ".sqlite");
+  std::filesystem::path candidate = output_path_ / base_filename;
+
+  for (int suffix = 1; std::filesystem::exists(candidate); ++suffix) {
+    candidate = output_path_ /
+                std::filesystem::path("biergarten_seed_" + run_timestamp_utc_ +
+                                      "-" + std::to_string(suffix) + ".sqlite");
+  }
+
+  return candidate;
+}
 
 void SqliteExportService::InitializeSchema() const {
   sqlite_export_service_internal::ExecSql(
@@ -46,7 +59,6 @@ void SqliteExportService::RollbackAndCloseNoThrow() noexcept {
   location_cache_.clear();
 }
 
-
 void SqliteExportService::Initialize() {
   if (db_handle_ != nullptr) {
     throw std::runtime_error("SQLite export service is already initialized");